SubtiBank SubtiBank
yxaJ [2019-06-12 10:49:28]
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yxaJ [2019-06-12 10:49:28]

unknown
locus
BSU39950
pI
9.06
mw
14.85 kDa
protein length
142 aa Sequence Blast
gene length
426 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    4,103,762 → 4,104,187

    The protein

    [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|0649520164CCC6120C40CE15EF08994BE0E79A25|yxaJ]-[gene|3BDC62A14BEEAEFD8E075E0958CAE41377808922|yxaL]
    description
    [Pubmed|10746760]

    regulatory mechanism

  • [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok]: repression, [Pubmed|15743949], in [regulon|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok regulon]
  • [protein|6740108089F13116F200C15F35C2E7561E990FEB|DnaA]: repression, [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok]-[protein|6740108089F13116F200C15F35C2E7561E990FEB|DnaA] [Pubmed|27902860,15743949], in [regulon|6740108089F13116F200C15F35C2E7561E990FEB|DnaA regulon]
  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|20817675,18840696], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

    • regulation

  • repressed by [protein|search|Rok] [Pubmed|15743949]
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    Biological materials

    Mutant

  • MGNA-B765 (yxaJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1764 NBRP B. subtilis, Japan]
  • BKE39950 (Δ[gene|0649520164CCC6120C40CE15EF08994BE0E79A25|yxaJ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39950 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCAAACTCCTCCTTTAAT, downstream forward: _UP4_TAGTTTTCTAGTTTGTGATG
  • BKK39950 (Δ[gene|0649520164CCC6120C40CE15EF08994BE0E79A25|yxaJ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39950 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCAAACTCCTCCTTTAAT, downstream forward: _UP4_TAGTTTTCTAGTTTGTGATG

    • References

  • 10746760,15743949,220817675,27902860